Optimization of macaque brain DMRI connectome by neuron tracing and myelin stain data

T Zhang, J Kong, K Jing, H Chen, X Jiang, L Li… - … Medical Imaging and …, 2018 - Elsevier
… To achieve this goal, we construct large-scale connectome … 1) to what extent are DTI
tractography pathways coincide with … Similar to evaluations from tract-tracing data, we had one C …

[HTML][HTML] The role of spatial embedding in mouse brain networks constructed from diffusion tractography and tracer injections

S Trinkle, S Foxley, G Wildenberg, N Kasthuri… - Neuroimage, 2021 - Elsevier
data in mice and neural tracer data from the Allen Mouse … of the true mesoscale connectome
of the mouse brain. Furthermore, we … of each brain graph was determined by optimizing the …

Whole mouse brain structural connectomics using magnetic resonance histology

N Wang, RJ Anderson, A Badea, G Cofer… - Brain Structure and …, 2018 - Springer
… We optimized the k-space sampling strategy for CS diffusion … reduce the acquisition time of
mouse brain DTI scans at 9.4 T … and a large-scale connectome in a single mouse brain, that …

[HTML][HTML] Structural and functional, empirical and modeled connectivity in the cerebral cortex of the rat

A Diaz-Parra, Z Osborn, S Canals, D Moratal, O Sporns - Neuroimage, 2017 - Elsevier
… available in TVB to joint optimization of their conduction … For instance, in the context of
large-scale brain networks, as in the … SC obtained from DTI, which may allow a neural mass model …

Estimating brain connectivity with diffusion-weighted magnetic resonance imaging: promise and peril

MD Grier, J Zimmermann, SR Heilbronner - … : Cognitive Neuroscience and …, 2020 - Elsevier
… are used to model neuronal projections and estimate … Herein, we will review publications
comparing anatomical tract tracing … This suggests that subject- or tract-specific optimization may …

Connectome imaging for mapping human brain pathways

Y Shi, AW Toga - Molecular psychiatry, 2017 - nature.com
… For large-scale studies such as the HCP, we need to … Optimization of existing connectome
protocols for a given time … With conventional DTI technology, major cortical bundles have …

Indexing and mining large-scale neuron databases using maximum inner product search

Z Li, R Fang, F Shen, A Katouzian, S Zhang - Pattern Recognition, 2017 - Elsevier
evaluate the proposed method on more than 17,000 neurons… the 3D neuron morphological
data, neuron tracing consists a … , we need to optimize W and R from the training neurons A , X …

When tractography meets tracer injections: a systematic study of trends and variation sources of diffusion-based connectivity

DB Aydogan, R Jacobs, S Dulawa… - Brain Structure and …, 2018 - Springer
… in mapping the mouse brain connectome, high-resolution … that the best results obtained with
DTI-based approaches were … for specific fiber bundles with optimized parameters and well-…

Navigation of brain networks

C Seguin, MP Van Den Heuvel… - Proceedings of the …, 2018 - National Acad Sciences
… R w e i obtained from direct optimization of the connectome’s … navigation as a model for
large-scale neural communication. … The diffusion tensor images (DTI) @ 15 μm spatial resolution …

[HTML][HTML] Using mesoscopic tract-tracing data to guide the estimation of fiber orientation distributions in the mouse brain from diffusion MRI

Z Liang, TM Arefin, CH Lee, J Zhang - Neuroimage, 2023 - Elsevier
… space, the downloaded axon tracing data of 373 neurons were converted from the original
… The network can be extended to include dMRI data acquired using optimized parameters or …